Mining germplasm panels and phenotypic datasets to identify loci for resistance to Phytophthora sojae in soybean.
Identifieur interne : 000126 ( Main/Exploration ); précédent : 000125; suivant : 000127Mining germplasm panels and phenotypic datasets to identify loci for resistance to Phytophthora sojae in soybean.
Auteurs : Kyujung Van [États-Unis] ; William Rolling [États-Unis] ; Ruslan M. Biyashev [États-Unis] ; Rashelle L. Matthiesen [États-Unis] ; Nilwala S. Abeysekara [États-Unis] ; Alison E. Robertson [États-Unis] ; Deloris J. Veney [États-Unis] ; Anne E. Dorrance [États-Unis] ; Leah K. Mchale [États-Unis] ; M A Saghai Maroof [États-Unis]Source :
- The plant genome [ 1940-3372 ] ; 2020.
Abstract
Phytophthora sojae causes Phytophthora root and stem rot of soybean and has been primarily managed through deployment of qualitative Resistance to P. sojae genes (Rps genes). The effectiveness of each individual or combination of Rps gene(s) depends on the diversity and pathotypes of the P. sojae populations present. Due to the complex nature of P. sojae populations, identification of more novel Rps genes is needed. In this study, phenotypic data from previous studies of 16 panels of plant introductions (PIs) were analyzed. Panels 1 and 2 consisted of 448 Glycine max and 520 G. soja, which had been evaluated for Rps gene response with a combination of P. sojae isolates. Panels 3 and 4 consisted of 429 and 460 G. max PIs, respectively, which had been evaluated using individual P. sojae isolates with complex virulence pathotypes. Finally, Panels 5-16 (376 G. max PIs) consisted of data deposited in the USDA Soybean Germplasm Collection from evaluations with 12 races of P. sojae. Using these panels, genome-wide association (GWA) analyses were carried out by combining phenotypic and SoySNP50K genotypic data. GWA models identified two, two, six, and seven novel Rps loci with Panels 1, 2, 3, and 4, respectively. A total of 58 novel Rps loci were identified using Panels 5-16. Genetic and phenotypic dissection of these loci may lead to the characterization of novel Rps genes that can be effectively deployed in new soybean cultivars against diverse P. sojae populations.
DOI: 10.1002/tpg2.20063
PubMed: 33200586
Affiliations:
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Biyashev</name><affiliation wicri:level="1"><nlm:affiliation>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061</wicri:regionArea><wicri:noRegion>24061</wicri:noRegion></affiliation></author><author><name sortKey="Matthiesen, Rashelle L" sort="Matthiesen, Rashelle L" uniqKey="Matthiesen R" first="Rashelle L" last="Matthiesen">Rashelle L. Matthiesen</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011</wicri:regionArea><orgName type="university">Université d'État de l'Iowa</orgName><placeName><settlement type="city">Ames (Iowa)</settlement><region type="state">Iowa</region></placeName></affiliation></author><author><name sortKey="Abeysekara, Nilwala S" sort="Abeysekara, Nilwala S" uniqKey="Abeysekara N" first="Nilwala S" last="Abeysekara">Nilwala S. Abeysekara</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011</wicri:regionArea><orgName type="university">Université d'État de l'Iowa</orgName><placeName><settlement type="city">Ames (Iowa)</settlement><region type="state">Iowa</region></placeName></affiliation></author><author><name sortKey="Robertson, Alison E" sort="Robertson, Alison E" uniqKey="Robertson A" first="Alison E" last="Robertson">Alison E. Robertson</name><affiliation wicri:level="4"><nlm:affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011</wicri:regionArea><orgName type="university">Université d'État de l'Iowa</orgName><placeName><settlement type="city">Ames (Iowa)</settlement><region type="state">Iowa</region></placeName></affiliation></author><author><name sortKey="Veney, Deloris J" sort="Veney, Deloris J" uniqKey="Veney D" first="Deloris J" last="Veney">Deloris J. Veney</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691</wicri:regionArea><wicri:noRegion>44691</wicri:noRegion></affiliation></author><author><name sortKey="Dorrance, Anne E" sort="Dorrance, Anne E" uniqKey="Dorrance A" first="Anne E" last="Dorrance">Anne E. Dorrance</name><affiliation wicri:level="1"><nlm:affiliation>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210</wicri:regionArea><wicri:noRegion>43210</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691</wicri:regionArea><wicri:noRegion>44691</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Center for Soybean Research, Ohio State University, Wooster, OH, 44691, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Soybean Research, Ohio State University, Wooster, OH, 44691</wicri:regionArea><wicri:noRegion>44691</wicri:noRegion></affiliation></author><author><name sortKey="Mchale, Leah K" sort="Mchale, Leah K" uniqKey="Mchale L" first="Leah K" last="Mchale">Leah K. Mchale</name><affiliation wicri:level="1"><nlm:affiliation>Department of Horticulture and Crop Science, Ohio State University, Columbus, OH, 43210, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Horticulture and Crop Science, Ohio State University, Columbus, OH, 43210</wicri:regionArea><wicri:noRegion>43210</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210</wicri:regionArea><wicri:noRegion>43210</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:affiliation>Center for Soybean Research, Ohio State University, Wooster, OH, 44691, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Center for Soybean Research, Ohio State University, Wooster, OH, 44691</wicri:regionArea><wicri:noRegion>44691</wicri:noRegion></affiliation></author><author><name sortKey="Saghai Maroof, M A" sort="Saghai Maroof, M A" uniqKey="Saghai Maroof M" first="M A" last="Saghai Maroof">M A Saghai Maroof</name><affiliation wicri:level="1"><nlm:affiliation>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061</wicri:regionArea><wicri:noRegion>24061</wicri:noRegion></affiliation></author></analytic><series><title level="j">The plant genome</title><idno type="eISSN">1940-3372</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora sojae causes Phytophthora root and stem rot of soybean and has been primarily managed through deployment of qualitative Resistance to P. sojae genes (Rps genes). The effectiveness of each individual or combination of Rps gene(s) depends on the diversity and pathotypes of the P. sojae populations present. Due to the complex nature of P. sojae populations, identification of more novel Rps genes is needed. In this study, phenotypic data from previous studies of 16 panels of plant introductions (PIs) were analyzed. Panels 1 and 2 consisted of 448 Glycine max and 520 G. soja, which had been evaluated for Rps gene response with a combination of P. sojae isolates. Panels 3 and 4 consisted of 429 and 460 G. max PIs, respectively, which had been evaluated using individual P. sojae isolates with complex virulence pathotypes. Finally, Panels 5-16 (376 G. max PIs) consisted of data deposited in the USDA Soybean Germplasm Collection from evaluations with 12 races of P. sojae. Using these panels, genome-wide association (GWA) analyses were carried out by combining phenotypic and SoySNP50K genotypic data. GWA models identified two, two, six, and seven novel Rps loci with Panels 1, 2, 3, and 4, respectively. A total of 58 novel Rps loci were identified using Panels 5-16. Genetic and phenotypic dissection of these loci may lead to the characterization of novel Rps genes that can be effectively deployed in new soybean cultivars against diverse P. sojae populations.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">33200586</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>17</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1940-3372</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Nov</Month><Day>16</Day></PubDate></JournalIssue><Title>The plant genome</Title><ISOAbbreviation>Plant Genome</ISOAbbreviation></Journal><ArticleTitle>Mining germplasm panels and phenotypic datasets to identify loci for resistance to Phytophthora sojae in soybean.</ArticleTitle><Pagination><MedlinePgn>e20063</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/tpg2.20063</ELocationID><Abstract><AbstractText>Phytophthora sojae causes Phytophthora root and stem rot of soybean and has been primarily managed through deployment of qualitative Resistance to P. sojae genes (Rps genes). The effectiveness of each individual or combination of Rps gene(s) depends on the diversity and pathotypes of the P. sojae populations present. Due to the complex nature of P. sojae populations, identification of more novel Rps genes is needed. In this study, phenotypic data from previous studies of 16 panels of plant introductions (PIs) were analyzed. Panels 1 and 2 consisted of 448 Glycine max and 520 G. soja, which had been evaluated for Rps gene response with a combination of P. sojae isolates. Panels 3 and 4 consisted of 429 and 460 G. max PIs, respectively, which had been evaluated using individual P. sojae isolates with complex virulence pathotypes. Finally, Panels 5-16 (376 G. max PIs) consisted of data deposited in the USDA Soybean Germplasm Collection from evaluations with 12 races of P. sojae. Using these panels, genome-wide association (GWA) analyses were carried out by combining phenotypic and SoySNP50K genotypic data. GWA models identified two, two, six, and seven novel Rps loci with Panels 1, 2, 3, and 4, respectively. A total of 58 novel Rps loci were identified using Panels 5-16. Genetic and phenotypic dissection of these loci may lead to the characterization of novel Rps genes that can be effectively deployed in new soybean cultivars against diverse P. sojae populations.</AbstractText><CopyrightInformation>© 2020 The Authors. The Plant Genome published by Wiley Periodicals LLC on behalf of Crop Science Society of America.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Van</LastName><ForeName>Kyujung</ForeName><Initials>K</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-7135-336X</Identifier><AffiliationInfo><Affiliation>Department of Horticulture and Crop Science, Ohio State University, Columbus, OH, 43210, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rolling</LastName><ForeName>William</ForeName><Initials>W</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-6893-9872</Identifier><AffiliationInfo><Affiliation>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Biyashev</LastName><ForeName>Ruslan M</ForeName><Initials>RM</Initials><AffiliationInfo><Affiliation>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matthiesen</LastName><ForeName>Rashelle L</ForeName><Initials>RL</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abeysekara</LastName><ForeName>Nilwala S</ForeName><Initials>NS</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robertson</LastName><ForeName>Alison E</ForeName><Initials>AE</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-4281-6350</Identifier><AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA, 50011, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Veney</LastName><ForeName>Deloris J</ForeName><Initials>DJ</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dorrance</LastName><ForeName>Anne E</ForeName><Initials>AE</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-4138-6707</Identifier><AffiliationInfo><Affiliation>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Plant Pathology, Ohio State University, Wooster, OH, 44691, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Center for Soybean Research, Ohio State University, Wooster, OH, 44691, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>McHale</LastName><ForeName>Leah K</ForeName><Initials>LK</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-1028-2315</Identifier><AffiliationInfo><Affiliation>Department of Horticulture and Crop Science, Ohio State University, Columbus, OH, 43210, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Center for Applied Plant Sciences, Ohio State University, Columbus, OH, 43210, USA.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Center for Soybean Research, Ohio State University, Wooster, OH, 44691, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Saghai Maroof</LastName><ForeName>M A</ForeName><Initials>MA</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-1398-7110</Identifier><AffiliationInfo><Affiliation>School of Plant and Environmental Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><Agency>Virginia Soybean Board</Agency><Country></Country></Grant><Grant><Agency>National Institute of Food and Agriculture</Agency><Country></Country></Grant><Grant><Agency>United Soybean Board</Agency><Country></Country></Grant><Grant><Agency>Iowa Soybean Association</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>11</Month><Day>16</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Plant Genome</MedlineTA><NlmUniqueID>101273919</NlmUniqueID><ISSNLinking>1940-3372</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>06</Month><Day>12</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>09</Month><Day>05</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>11</Month><Day>17</Day><Hour>6</Hour><Minute>29</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>11</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>11</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33200586</ArticleId><ArticleId IdType="doi">10.1002/tpg2.20063</ArticleId></ArticleIdList><ReferenceList><Title>REFERENCES</Title><Reference><Citation>Abney, T. 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Biyashev</name><name sortKey="Dorrance, Anne E" sort="Dorrance, Anne E" uniqKey="Dorrance A" first="Anne E" last="Dorrance">Anne E. Dorrance</name><name sortKey="Dorrance, Anne E" sort="Dorrance, Anne E" uniqKey="Dorrance A" first="Anne E" last="Dorrance">Anne E. Dorrance</name><name sortKey="Dorrance, Anne E" sort="Dorrance, Anne E" uniqKey="Dorrance A" first="Anne E" last="Dorrance">Anne E. Dorrance</name><name sortKey="Matthiesen, Rashelle L" sort="Matthiesen, Rashelle L" uniqKey="Matthiesen R" first="Rashelle L" last="Matthiesen">Rashelle L. Matthiesen</name><name sortKey="Mchale, Leah K" sort="Mchale, Leah K" uniqKey="Mchale L" first="Leah K" last="Mchale">Leah K. Mchale</name><name sortKey="Mchale, Leah K" sort="Mchale, Leah K" uniqKey="Mchale L" first="Leah K" last="Mchale">Leah K. Mchale</name><name sortKey="Mchale, Leah K" sort="Mchale, Leah K" uniqKey="Mchale L" first="Leah K" last="Mchale">Leah K. Mchale</name><name sortKey="Robertson, Alison E" sort="Robertson, Alison E" uniqKey="Robertson A" first="Alison E" last="Robertson">Alison E. Robertson</name><name sortKey="Rolling, William" sort="Rolling, William" uniqKey="Rolling W" first="William" last="Rolling">William Rolling</name><name sortKey="Saghai Maroof, M A" sort="Saghai Maroof, M A" uniqKey="Saghai Maroof M" first="M A" last="Saghai Maroof">M A Saghai Maroof</name><name sortKey="Veney, Deloris J" sort="Veney, Deloris J" uniqKey="Veney D" first="Deloris J" last="Veney">Deloris J. Veney</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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